GitHub - 1st1/lat.md: Agent Lattice: a knowledge graph for your codebase, written in markdown.

A knowledge graph for your codebase, written in markdown.

The problem

AGENTS.md doesn't scale. A single flat file can describe a small project, but as a codebase grows, maintaining one monolithic document becomes impractical. Key design decisions get buried, business logic goes undocumented, and agents hallucinate context they should be able to look up.

The idea

Compress the knowledge about your program domain into a graph — a set of interconnected markdown files that live in a lat.md/ directory at the root of your project. Sections link to each other with [[wiki links]], markdown files link into the codebase ([[src/auth.ts#validateToken]]), source files link back with // @lat: [[section-id]] comments, and lat check ensures nothing drifts out of sync.

Faster coding for agents — instead of grepping through your codebase, agents search the knowledge graph to discover key design decisions, constraints, and domain context fast and consistently.
Faster workflow for humans — your agents maintain lat files for you. When you review a diff, start with the semantic changes in lat.md/ to understand what changed and why. Reviewing code becomes the secondary task.
Knowledge retention — the context and reasoning behind your prompts is usually lost after a session ends. With lat, agents capture that knowledge into the graph as they work, so future sessions start with full context instead of rediscovering it from scratch.
Test specs with enforcement — test cases can be described as sections in lat.md/ and marked with require-code-mention: true. Each spec then must be referenced by a // @lat: comment in test code. lat check flags any spec without a backlink, so you can review and maintain test coverage from the knowledge graph.

The lat CLI gives agents and humans a system to navigate and maintain the graph:

lat init — sets up popular coding agents with hooks and instructions to keep lat updated and correct
lat check — enforces referential consistency; agents call it automatically before finishing work
lat search and lat section — agents use these to understand your prompts and navigate the graph instead of endless grep calls

lat is a workflow that comes with tools — build pre-commit hooks and GitHub bots, run CI tasks that improve the knowledge graph in the background.

Install

Then run lat init in the repo you want to use lat in.

How it works

Run lat init to scaffold a lat.md/ directory, then write markdown files describing your architecture, business logic, test specs — whatever matters. Link between sections using [[file#Section#Subsection]] syntax. Link to source code symbols with [[src/auth.ts#validateToken]]. Annotate source code with // @lat: [[section-id]] (or # @lat: [[section-id]] in Python) comments to tie implementation back to concepts.

my-project/
├── lat.md/
│   ├── architecture.md    # system design, key decisions
│   ├── auth.md            # authentication & authorization logic
│   └── tests.md           # test specs (require-code-mention: true)
├── src/
│   ├── auth.ts            # // @lat: [[auth#OAuth Flow]]
│   └── server.ts          # // @lat: [[architecture#Request Pipeline]]
└── ...

CLI

lat init                        # scaffold a lat.md/ directory
lat check                       # validate all wiki links and code refs
lat locate "OAuth Flow"         # find sections by name (exact, fuzzy)
lat section "auth#OAuth Flow"   # show a section with its links and refs
lat refs "auth#OAuth Flow"      # find what references a section
lat search "how do we auth?"    # semantic search via embeddings
lat expand "fix [[OAuth Flow]]" # expand [[refs]] in a prompt for agents
lat mcp                         # start MCP server for editor integration

Configuration

Semantic search (lat search) requires an OpenAI (sk-...) or Vercel AI Gateway (vck_...) API key. The key is resolved in order:

LAT_LLM_KEY env var — direct value
LAT_LLM_KEY_FILE env var — path to a file containing the key
LAT_LLM_KEY_HELPER env var — shell command that prints the key (10s timeout)
Config file — saved by lat init. Run lat config to see its location.

Development

Requires Node.js 22+ and pnpm.

pnpm install
pnpm build
pnpm test