NRNB and Cytoscape
Introduction to the National Resource for Network Biology
How to Cite Cytoscape
Cytoscape project needs your support!
Please cite the original Cytoscape paper when you use Cytoscape. This is critical to sustaining our federal funding.
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T.
Cytoscape: a software environment for integrated models of biomolecular interaction networks
Genome Research 2003 Nov; 13(11):2498-504
For Cytoscape Web, please cite:
Ono K, Fong D, Gao C, Churas C, Pillich R, Lenkiewicz J, Pratt D, Pico AR, Hanspers K, Xin Y, Morris J, Kucera M, Franz M, Lopes C, Bader G, Ideker T, Chen J
Cytoscape Web: bringing network biology to the browser
Nucleic Acids Research, 2025;, gkaf365
For automation usage and implementation leveraging CyREST, Commands or our R and Python libraries, please cite:
Otasek, et al., Cytoscape Automation: empowering workflow-based network analysis Genome Biology, 20:185 (2019)
[Abstract]
[PDF]
[PubMed entry]
Other articles and papers about Cytoscape are available here.
How to Donate to Cytoscape
This is a tax deductible donation to a 501(c)(3) nonprofit organization,
The Cytoscape Consoritum, Tax ID: 20-4909879.